red p value: p < 0.05, left timepoint/group is higher than right timepoint/group
blue p value: p < 0.05, left timepoint/group is lower than right timepoint/group
black p value: p > 0.05
only p < 0.05 are shown for clarity
red p value: left timepoint/group is higher than right timepoint/group
blue p value: left timepoint/group is lower than right timepoint/group
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Animals in correlations: 15P044, 17P008, 17P039, 17P062, 18C266, DG8Z, DG8i, DGX3, DHF6, RA6, RH5, RKF, TMN, TRE, TZW
calculate comparisons between CellSubsets in BAL vs ChiVsWT_Cytokines_inBAL : CCL19xx__week12, CCL3xx__week12, FLT3LGxx__week21, IL15xx__week21, IL18xx__week21, IL1Bxx__week05, IL1Bxx__week21, IL33xx__week21, MMP1xx__week05, MMP12xx__week00
calculate comparisons between CellSubsets in Blood vs ChiVsWT_Cytokines_inBAL : CCL19xx__week12, CCL3xx__week12, FLT3LGxx__week21, IL15xx__week21, IL18xx__week21, IL1Bxx__week05, IL1Bxx__week21, IL33xx__week21, MMP1xx__week05, MMP12xx__week00
calculate comparisons between CellSubsets in Blood vs ChiVsWT_Cytokines_inBlood : CCL13xx__week12, CCL2xx__week12, IL33xx__week12, IL6xx__week05, IL7xx__week00
calculate comparisons between CellSubsets in BAL vs ChiVsWT_Cytokines_inBlood : CCL13xx__week12, CCL2xx__week12, IL33xx__week12, IL6xx__week05, IL7xx__week00
compile associations with p < 0.001
compile associations with p < 0.01
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## R version 4.4.1 (2024-06-14)
## Platform: aarch64-apple-darwin20
## Running under: macOS 15.4.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/New_York
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] rstatix_0.7.2 janitor_2.2.0 geepack_1.3.10 MESS_0.5.12
## [5] ggalluvial_0.12.5 pander_0.6.5 strex_2.0.1 data.table_1.16.2
## [9] factoextra_1.0.7 corrplot_0.95 colorspace_2.1-1 RColorBrewer_1.1-3
## [13] officer_0.6.6 flextable_0.9.6 ggplotify_0.1.2 plotly_4.10.4
## [17] ggrepel_0.9.6 ggbeeswarm_0.7.2 downloadthis_0.3.3 DT_0.33
## [21] gridExtra_2.3 gtsummary_1.7.2 kableExtra_1.4.0 broom_1.0.7
## [25] knitr_1.48 ggpubr_0.6.0 dendsort_0.3.4 pheatmap_1.0.12
## [29] cowplot_1.1.3 lubridate_1.9.3 forcats_1.0.0 stringr_1.5.1
## [33] dplyr_1.1.4 purrr_1.0.2 readr_2.1.5 tidyr_1.3.1
## [37] tibble_3.2.1 ggplot2_3.5.1 tidyverse_2.0.0 readxl_1.4.3
## [41] openxlsx_4.2.5.2
##
## loaded via a namespace (and not attached):
## [1] geeM_0.10.1 rstudioapi_0.16.0 jsonlite_1.8.9
## [4] magrittr_2.0.3 farver_2.1.2 rmarkdown_2.28
## [7] fs_1.6.4 ragg_1.3.1 vctrs_0.6.5
## [10] memoise_2.0.1 askpass_1.2.1 htmltools_0.5.8.1
## [13] haven_2.5.4 curl_5.2.3 cellranger_1.1.0
## [16] Formula_1.2-5 gridGraphics_0.5-1 sass_0.4.9
## [19] bslib_0.8.0 htmlwidgets_1.6.4 cachem_1.1.0
## [22] gt_0.10.1 uuid_1.2-0 mime_0.12
## [25] lifecycle_1.0.4 pkgconfig_2.0.3 Matrix_1.7-0
## [28] R6_2.5.1 fastmap_1.2.0 snakecase_0.11.1
## [31] shiny_1.10.0 digest_0.6.37 textshaping_0.3.7
## [34] crosstalk_1.2.1 labeling_0.4.3 fansi_1.0.6
## [37] timechange_0.3.0 httr_1.4.7 abind_1.4-8
## [40] compiler_4.4.1 fontquiver_0.2.1 withr_3.0.2
## [43] backports_1.5.0 carData_3.0-5 highr_0.11
## [46] ggsignif_0.6.4 MASS_7.3-60.2 openssl_2.2.2
## [49] gfonts_0.2.0 tools_4.4.1 vipor_0.4.7
## [52] beeswarm_0.4.0 zip_2.3.1 httpuv_1.6.15
## [55] clipr_0.8.0 glue_1.8.0 promises_1.3.2
## [58] grid_4.4.1 checkmate_2.3.1 ggformula_0.12.0
## [61] generics_0.1.3 gtable_0.3.6 labelled_2.13.0
## [64] tzdb_0.4.0 hms_1.1.3 xml2_1.3.6
## [67] car_3.1-3 utf8_1.2.4 pillar_1.9.0
## [70] yulab.utils_0.1.4 later_1.3.2 lattice_0.22-6
## [73] tidyselect_1.2.1 fontLiberation_0.1.0 fontBitstreamVera_0.1.1
## [76] svglite_2.1.3 crul_1.4.2 xfun_0.48
## [79] mosaicCore_0.9.4.0 stringi_1.8.4 lazyeval_0.2.2
## [82] yaml_2.3.10 evaluate_1.0.1 httpcode_0.3.0
## [85] gdtools_0.3.7 cli_3.6.3 xtable_1.8-4
## [88] systemfonts_1.1.0 munsell_0.5.1 jquerylib_0.1.4
## [91] Rcpp_1.0.13 viridisLite_0.4.2 broom.helpers_1.15.0
## [94] ggridges_0.5.6 scales_1.3.0 crayon_1.5.3
## [97] rlang_1.1.4